Eckold, C., van Doorn, CLR., Ruslami, R., Ronacher, K., Riza, A., van Veen, S., Lee, J., Kumar, V., Kerry‐Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Joosten, SA., Critchley, JA., Hill, PC., van Crevel, R., Wijmenga, C., Haks, MC., Ioana, M., Alisjahbana, B., Walzl, G., Ottenhoff, THM., Dockrell, HM., Vianello, E. and Cliff, JM. et al. (2023) 'Impaired resolution of blood transcriptomes through tuberculosis treatment with diabetes comorbidity'. Clinical and Translational Medicine, 13 (9). pp. 1 - 19. ISSN: 2001-1326

van Doorn, CLR., Eckold, C., Ronacher, K., Ruslami, R., van Veen, S., Lee, J-S., Kumar, V., Kerry-Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Hill, PC., Joosten, SA., van Crevel, R., Wijmenga, C., Critchley, JA., Walzl, G., Alisjahbana, B., Haks, MC., Dockrell, HM., Ottenhoff, THM., Vianello, E., Cliff, JM. and the TANDEM Consortium. et al. (2022) 'Transcriptional profiles predict treatment outcome in patients with tuberculosis and diabetes at diagnosis and at two weeks after initiation of anti-tuberculosis treatment'. eBioMedicine, 82. pp. 1 - 17. ISSN: 2352-3964

Jacobs, R., Awoniyi, DO., Baumann, R., Stanley, K., McAnda, S., Kaempfer, S., Malherbe, ST., Singh, M., Walzl, G., Chegou, NN., Walzl, G., Chegou, NN., Kriel, M., van der Spuy, G., Loxton, AG., Stanley, K., Malherbe, ST., Kriel, B., Sutherland, JS., Owolabi, O., Sillah, A., Mendy, J., Gindeh, A., Donkor, S., Togun, T., Ota, M., Crampin, AC., Simukonda, F., Amberbir, A., Chilongo, F., Houben, R., Kassa, D., Gebrezgeabher, A., Mesfin, G., Belay, Y., Gebremichael, G., Alemayehu, Y., van der Vyver, M., Amutenya, FN., Nelongo, JN., Monye, L., Sheehama, JA., Iipinge, S., Mayanja-Kizza, H., Namuganga, AR., Muzanye, G., Nsereko, M., Peters, P., Howe, R., Mihret, A., Bekele, Y., Tessema, B., Yamuah, L., Ottenhoff, THM., Geluk, A., Franken, K., van der Ploeg-van Schip, JJ., Corstjens, PLAM., Tjon Kon Fat, EM., de Dood, CJ., Rosenkrands, I., Aagaard, C., Kaufmann, SHE., Esterhuyse, MM., Cliff, JM. and Dockrell, HM. et al. (2022) 'Concurrent evaluation of cytokines improves the accuracy of antibodies against Mycobacterium tuberculosis antigens in the diagnosis of active tuberculosis'. Tuberculosis, 133. pp. 1 - 8. ISSN: 1472-9792

Lee, J-S., Lacerda, EM., Nacul, L., Kingdon, CC., Norris, J., O'Boyle, S., Roberts, CH., Palla, L., Riley, EM. and Cliff, JM. et al. (2021) 'Salivary DNA Loads for Human Herpesviruses 6 and 7 Are Correlated With Disease Phenotype in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome'. Frontiers in Medicine, 8. pp. 1 - 17. ISSN: 2296-858X

Domingues, TD., Grabowska, AD., Lee, J-S., Ameijeiras-Alonso, J., Westermeier, F., Scheibenbogen, C., Cliff, JM., Nacul, L., Lacerda, EM., Mouriño, H. and Sepúlveda, N. et al. (2021) 'Herpesviruses Serology Distinguishes Different Subgroups of Patients From the United Kingdom Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Biobank'. Frontiers in Medicine, 8. pp. 1 - x. ISSN: 2296-858X

Yimthin, T., Cliff, JM., Phunpang, R., Ekchariyawat, P., Kaewarpai, T., Lee, J-S., Eckold, C., Andrada, M., Thiansukhon, E., Tanwisaid, K., Chuananont, S., Morakot, C., Sangsa, N., Silakun, W., Chayangsu, S., Buasi, N., Day, N., Lertmemongkolchai, G., Chantratita, W., West, TE. and Chantratita, N. et al. (2020) 'Blood transcriptomics to characterize key biological pathways and identify biomarkers for predicting mortality in melioidosis'. Emerging Microbes and Infections, 10 (1). pp. 8 - 18. ISSN: 2222-1751

Eckold, C., Kumar, V., Weiner, J., Alisjahbana, B., Riza, A-L., Ronacher, K., Coronel, J., Kerry-Barnard, S., Malherbe, ST., Kleynhans, L., Stanley, K., Ruslami, R., Ioana, M., Ugarte-Gil, C., Walzl, G., van Crevel, R., Wijmenga, C., Critchley, JA., Dockrell, HM., Cliff, JM., Dockrell, H., Cliff, J., Eckold, C., Moore, D., Griffiths, U., Laurence, Y., Aarnouste, R., Netea, M., van Crevel, R., Ruesen, C., Lachmandas, E., Kaufmann, S., Beigier, M., Golinski, R., Joosten, S., Ottenhoff, T., Vrieling, F., Haks, M., Walzl, G., Ronacher, K., Malherbe, S., Kleynhans, L., Smith, B., Stanley, K., van der Spuy, G., Loxton, A., Chegou, N., Bosman, M., Thiart, L., Wagman, C., Tshivhula, H., Selamolela, M., Prins, N., du Plessis, W., van Rensburg, I., du Toit, L., Critchley, J., Kerry-Barnard, S., Pearson, F., Grint, D., McAllister, S., Hill, P., Verrall, A., Ioana, M., Riza, A., Cioboata, R., Dudau, M., Nitu, F., Bazavan, I., Olteanu, M., Editoiu, C., Florescu, A., Mota, M., Popa, SG., Firanescu, A., Popa, A., Gheonea, I., Bicuti, S., Lepadat, A., Vladu, I., Clenciu, D., Bicu, M., Streba, C., Demetrian, A., Ciurea, M., Cimpoeru, A., Ciocoiu, A., Dorobantu, S., Plesea, R., Popescu, EL., Cucu, M., Streata, I., Burada, F., Serban-Sosoi, S., Panduru, N., Nicoli, E., Ciontea, M., Capitanescu, I., Olaru, M., Tataru, T., Papurica, M., Valutanu, I., Dubreu, V., Stamatoiu, L., Kumar, V., Wijmenga, C., Ugarte-Gil, C., Coronel, J., Lopez, S., Limascca, R., Villaizan, K., Castro, B., Flores, J., Solano, W., Alisjahbana, B., Ruslami, R., Soetedjo, N., Santoso, P., Chaidir, L., Koesoemadinata, R., Susilawati, N., Annisa, J., Livia, R., Yunivita, V., Soeroto, A., Permana, H., Imaculata, S., Gunawan, Y., Dewi, N., Apriani, L. and TANDEM (Concurrent Tuberculosis and Diabetes Mellitus; unraveling the causal link, and improving care) Consortium. et al. (2020) 'Impact of Intermediate Hyperglycemia and Diabetes on Immune Dysfunction in Tuberculosis'. Clinical Infectious Diseases, 72 (1). pp. 69 - 78. ISSN: 1058-4838

Lachmandas, E., Eckold, C., Böhme, J., Koeken, VACM., Marzuki, MB., Blok, B., Arts, RJW., Chen, J., Teng, KWW., Ratter, J., Smolders, EJ., Van Den Heuvel, C., Stienstra, R., Dockrell, HM., Newell, E., Netea, MG., Singhal, A., Cliff, JM. and Van Crevel, R. et al. (2019) 'Metformin Alters Human Host Responses to Mycobacterium tuberculosis in Healthy Subjects'. Journal of Infectious Diseases, 220 (1). pp. 139 - 150. ISSN: 0022-1899

Cliff, JM., King, EC., Lee, J-S., Sepúlveda, N., Wolf, A-S., Kingdon, C., Bowman, E., Dockrell, HM., Nacul, L., Lacerda, E. and Riley, EM. et al. (2019) 'Cellular immune function in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)'. Frontiers in Immunology, 10 (MAR). pp. 1 - 15. ISSN: 1664-3224

Gebremicael, G., Kassa, D., Quinten, E., Alemayehu, Y., Gebreegziaxier, A., Belay, Y., Van Baarle, D., Ottenhoff, THM., Cliff, JM. and Haks, MC. et al. (2018) 'Host gene expression kinetics during treatment of tuberculosis in HIV-coinfected individuals is independent of highly active antiretroviral therapy'. Journal of Infectious Diseases, 218 (11). pp. 1833 - 1846. ISSN: 0022-1899

Andreu, N., Phelan, J., De Sessions, PF., Cliff, JM., Clark, TG. and Hibberd, ML. (2017) 'Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis'. Scientific Reports, 7 (1). pp. 42225. ISSN: 2045-2322

Cliff, JM., Cho, JE., Lee, JS., Ronacher, K., King, EC., Van Helden, P., Walzl, G. and Dockrell, HM. et al. (2015) 'Excessive cytolytic responses predict tuberculosis relapse after apparently successful treatment'. Journal of Infectious Diseases, 213 (3). pp. 485 - 495. ISSN: 0022-1899

Cliff, JM., Kaufmann, SHE., Mcshane, H., van Helden, P. and O'Garra, A. (2015) 'The human immune response to tuberculosis and its treatment: A view from the blood'. Immunological Reviews, 264 (1). pp. 88 - 102. ISSN: 0105-2896

Cliff, JM., Lee, JS., Constantinou, N., Cho, JE., Clark, TG., Ronacher, K., King, EC., Lukey, PT., Duncan, K., Van Helden, PD., Walzl, G. and Dockrell, HM. et al. (2013) 'Distinct phases of blood gene expression pattern through tuberculosis treatment reflect modulation of the humoral immune response'. Journal of Infectious Diseases, 207 (1). pp. 18 - 29. ISSN: 0022-1899

Mistry, R., Cliff, JM., Clayfon, CL., Beyers, N., Mohamed, YS., Wilson, PA., Dockrell, HM., Wallace, DM., Van Helden, PD., Duncan, K. and Lukey, PT. et al. (2007) 'Gene-expression patterns in whole blood identify subjects at risk for recurrent tuberculosis'. Journal of Infectious Diseases, 195 (3). pp. 357 - 365. ISSN: 0022-1899