Ghorbani, M., Suleimenova, D., Jahani, A., Saha, A., Xue, Y., Mintram, K., Anagnostou, A., Tas, A., Low, W., Taylor, SJE. and Groen, D. et al. (2024) 'Flee 3: Flexible agent-based simulation for forced migration'. Journal of Computational Science, 81. pp. 1 - 14. ISSN: 1877-7503 Open Access Link

Boesjes, F., Jahani, A., Ooink, B. and Groen, D. (2024) 'Analysing the effect of a dynamic physical environment network on the travel dynamics of forcibly displaced persons in Mali'. International Journal of Network Dynamics and Intelligence, 3. pp. 1 - 9.Open Access Link

Saha, A., Ghorbani, M., Suleimenova, D., Anagnostou, A. and Groen, D. (2023) 'Impact of geography on the importance of parameters in infectious disease models'. Scientific Reports. ISSN: 2045-2322

Groen, D., Papadopoulou, N., Anastasiadis, P., Lawenda, M., Szustak, L., Gogolenko, S., Arabnejad, H. and Jahani, A. et al. (2023) 'Large-scale parallelization of Human Migration Simulation'. IEEE Transactions on Computational Social Systems, 11 (2). pp. 2135 - 2146. ISSN: 2329-924X Open Access Link

Groen, D., Suleimenova, D., Jahani, A. and Xue, Y. (2023) 'Facilitating simulation development for global challenge response and anticipation in a timely way'. Journal of Computational Science, 72. pp. 1 - 11. ISSN: 1877-7503 Open Access Link

Groen, D., Arabnejad, H., Suleimenova, D., Edeling, W., Raffin, E., Xue, Y., Bronik, K., Monnier, N. and Coveney, P. et al. (2022) 'FabSim3: An automation toolkit for verified simulations using high performance computing'. Computer Physics Communications, 283. pp. 1 - 18. ISSN: 0010-4655 Open Access Link

Anastasiadis, P., Gogolenko, S., Papadopoulou, N., Lawenda, M., Arabnejad, H., Jahani, A., Mahmood, I. and Groen, D. et al. (2021) 'P-Flee: An Efficient Parallel Algorithm for Simulating Human Migration'.2021 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW). Portland, OR, USA. 17 - 21 June. IEEE. pp. 1008 - 1011.Open Access Link

Schweimer, C., Geiger, BC., Wang, M., Gogolenko, S., Mahmood, I., Jahani, A., Suleimenova, D. and Groen, D. et al. (2021) 'A route pruning algorithm for an automated geographic location graph construction'. Scientific Reports, 11 (1). pp. 1 - 11. ISSN: 2045-2322 Open Access Link

Groen, D., Arabnejad, H., Jancauskas, V., Edeling, WN., Jansson, F., Richardson, RA., Lakhlili, J., Veen, L., Bosak, B., Kopta, P., Wright, DW., Monnier, N., Karlshoefer, P., Suleimenova, D., Sinclair, R., Vassaux, M., Nikishova, A., Bieniek, M., Luk, OO., Kulczewski, M., Raffin, E., Crommelin, D., Hoenen, O., Coster, DP., Piontek, T. and Coveney, PV. et al. (2021) 'VECMAtk: A Scalable Verification, Validation and UncertaintyQuantification Toolkit for Scientific Simulations'. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 379 (2197). pp. 1 - 22. ISSN: 1364-503X Open Access Link

Suleimenova, D., Arabnejad, H., Edeling, WN. and Groen, D. (2021) 'Sensitivity-driven simulation development: a case study in forced migration'. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 379 (2197). pp. 1 - 18. ISSN: 1364-503X Open Access Link

Edeling, W., Arabnejad, H., Sinclair, R., Suleimenova, D., Gopalakrishnan, K., Bosak, B., Groen, D., Mahmood, I., Crommelin, D. and Coveney, PV. et al. (2021) 'The impact of uncertainty on predictions of the CovidSim epidemiological code'. Nature Computational Science, 1 (2). pp. 128 - 135. ISSN: 2662-8457 Open Access Link

Mahmood, I., Arabnejad, H., Suleimenova, D., Sassoon, I., Marshan, A., Serrano, A., Louvieris, P., Anagnostou, A., Taylor, S., Bell, D. and Groen, D. et al. (2020) 'FACS: A geospatial agent-based simulator for analyzing COVID-19 spread and public health measures on local regions'. Journal of Simulation, 16 (4). pp. 355 - 373. ISSN: 1747-7778 Open Access Link

Wright, DW., Richardson, RA., Edeling, W., Lakhlili, J., Sinclair, RC., Jancauskas, V., Suleimenova, D., Bosak, B., Kulczewski, M., Piontek, T., Kopta, P., Chirca, I., Arabnejad, H., Luk, OO., Hoenen, O., Węglarz, J., Crommelin, D., Groen, D. and Coveney, PV. et al. (2020) 'Building Confidence in Simulation: Applications of EasyVVUQ'. Advanced Theory and Simulations, 3 (8). pp. 1 - 22. ISSN: 2513-0390 Open Access Link

Suleimenova, D. and Groen, D. (2020) 'How Policy Decisions Affect Refugee Journeys in South Sudan: A Study using Automated Ensemble Simulations'. Journal of Artificial Societies and Social Simulation, 23 (1). pp. 1 - 16. ISSN: 1460-7425 Open Access Link

Groen, D., Knap, J., Neumann, P., Suleimenova, D., Veen, L. and Leiter, K. (2019) 'Mastering the scales: A survey on the benefits of multiscale computing software'. Philosophical Transactions A: Mathematical, Physical and Engineering Sciences, 377 (2142). pp. 1 - 16. ISSN: 1364-503X Open Access Link

Alowayyed, S., Piontek, T., Suter, JL., Hoenen, O., Groen, D., Luk, O., Bosak, B., Kopta, P., Kurowski, K., Perks, O., Brabazon, K., Jancauskas, V., Coster, D., Coveney, PV. and Hoekstra, AG. et al. (2018) 'Patterns for High Performance Multiscale Computing'. Future Generation Computer Systems, 91. pp. 335 - 346. ISSN: 0167-739X Open Access Link

Groen, D., Richardson, RA., Coy, R., Schiller, UD., Chandrashekar, H., Robertson, F. and Coveney, PV. et al. (2018) 'Validation of patient-specific cerebral blood flow simulation using transcranial Doppler measurements'. Frontiers in Physiology, 9 (JUN). pp. 721. ISSN: 1664-042X Open Access Link

Kaufmann, L., Razakanirina, R., Groen, D. and Chopard, B. (2018) 'Impact of immigrants on a multi-agent economical system'. PLoS ONE, 13 (5). pp. e0197509 - e0197509. ISSN: 1932-6203 Open Access Link

Suleimenova, D., Bell, D. and Groen, D. (2017) 'A generalized simulation development approach for predicting refugee destinations'. Scientific Reports, 7 (1). pp. 13377. ISSN: 2045-2322 Open Access Link

Alowayyed, S., Groen, D., Hoekstra, AG. and Coveney, PV. (2017) 'Multiscale Computing in the Exascale Era'. Journal of Computational Science, 22 (September 2017). pp. 15 - 25. ISSN: 1877-7503 Open Access Link

Groen, D., Bhati, A., Suter, J., Hetherington, J., Zasada, S. and Coveney, PV. (2016) 'FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures'. Computer Physics Communications, 207. pp. 375 - 385. ISSN: 0010-4655 Open Access Link

Suter, JL., Groen, D. and Coveney, PV. (2015) 'Mechanism of Exfoliation and Prediction of Materials Properties of Clay-Polymer Nanocomposites from Multiscale Modeling'. Nano Letters, 15 (12). pp. 8108 - 8113. ISSN: 1530-6984

Groen, D. and Calderhead, B. (2015) 'Cutting edge: Science hackathons for developing interdisciplinary research and collaborations'. ELIFE, 4 (JULY 2015). pp. e09944. ISSN: 2050-084X Open Access Link

Itani, MA., Schiller, UD., Schmieschek, S., Hetherington, J., Bernabeu, MO., Chandrashekar, H., Robertson, F., Coveney, PV. and Groen, D. et al. (2015) 'An automated multiscale ensemble simulation approach for vascular blood flow'. Journal of Computational Science, 9. pp. 150 - 155. ISSN: 1877-7503 Open Access Link

Suter, JL., Groen, D. and Coveney, PV. (2014) 'Chemically specific multiscale modeling of clay-polymer nanocomposites reveals intercalation dynamics, tactoid self-assembly and emergent materials properties'. Advanced Materials, 27 (6). pp. 966 - 984. ISSN: 0935-9648 Open Access Link

Bernabeu, MO., Jones, ML., Nielsen, JH., Krüger, T., Nash, RW., Groen, D., Schmieschek, S., Hetherington, J., Gerhardt, H., Franco, CA. and Coveney, PV. et al. (2014) 'Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis'. Journal of the Royal Society, Interface / the Royal Society, 11 (99). pp. 20140543 - 20140543. ISSN: 1742-5689 Open Access Link

Borgdorff, J., Mamonski, M., Bosak, B., Kurowski, K., Ben Belgacem, M., Chopard, B., Groen, D., Coveney, PV. and Hoekstra, AG. et al. (2014) 'Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment'. JOURNAL OF COMPUTATIONAL SCIENCE, 5 (5). pp. 719 - 731. ISSN: 1877-7503 Open Access Link

Borgdorff, J., Belgacem, MB., Bona-Casas, C., Fazendeiro, L., Groen, D., Hoenen, O., Mizeranschi, A., Suter, JL., Coster, D., Coveney, PV., Dubitzky, W., Hoekstra, AG., Strand, P. and Chopard, B. et al. (2014) 'Performance of distributed multiscale simulations'. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 372 (2021). pp. 20130407 - 20130407. ISSN: 1364-503X Open Access Link

Groen, D., Zasada, SJ. and Coveney, PV. (2014) 'Survey of Multiscale and Multiphysics Applications and Communities'. COMPUTING IN SCIENCE & ENGINEERING, 16 (2). pp. 34 - 43. ISSN: 1521-9615 Open Access Link

Nash, RW., Carver, HB., Bernabeu, MO., Hetherington, J., Groen, D., Krüger, T. and Coveney, PV. et al. (2014) 'Choice of boundary condition for lattice-Boltzmann simulation of moderate-Reynolds-number flow in complex domains'. Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, 89 (2). pp. 023303. ISSN: 1539-3755

Groen, D., Rieder, S. and Zwart, SP. (2013) 'MPWide: a light-weight library for efficient message passing over wide area networks'. Journal of Open Research Software, 1. pp. e9 - e9. ISSN: 2049-9647 Open Access Link

Groen ), D., Hetherington, J., Carver, HB., Nash, RW., Bernabeu, MO. and Coveney, PV. (2013) 'Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment'. Journal of Computational Science, 4 (5). pp. 412 - 422. ISSN: 1877-7503

Groen, D., Borgdorff, J., Bona-Casas, C., Hetherington, J., Nash, RW., Zasada, SJ., Saverchenko, I., Mamonski, M., Kurowski, K., Bernabeu, MO., Hoekstra, AG. and Coveney, PV. et al. (2013) 'Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations'. Interface Focus, 3 (2). pp. 20120087 - 20120087. ISSN: 2042-8898

Groen, D., Zwart, SP., Ishiyama, T. and Makino, J. (2011) 'High-performance gravitational N-body simulations on a planet-wide- distributed supercomputer'. Computational Science and Discovery, 4 (1). pp. 015001 - 015001. ISSN: 1749-4680

Portegies Zwart, S., McMillan, S., Harfst, S., Groen, D., Fujii, M., Nualláin, BO., Glebbeek, E., Heggie, D., Lombardi, J., Hut, P., Angelou, V., Banerjee, S., Belkus, H., Fragos, T., Fregeau, J., Gaburov, E., Izzard, R., Jurić, M., Justham, S., Sottoriva, A., Teuben, P., van Bever, J., Yaron, O. and Zemp, M. et al. (2009) 'A multiphysics and multiscale software environment for modeling astrophysical systems'. New Astronomy, 14 (4). pp. 369 - 378. ISSN: 1384-1076