Federico, C., Bruno, F., Ragusa, D., Clements, CS., Brancato, D., Henry, MP., Bridger, JM., Tosi, S. and Saccone, S. et al. (2021) 'Chromosomal Rearrangements and Altered Nuclear Organization: Recent Mechanistic Models in Cancer'. Cancers, 13 (22). pp. 1 - 13. ISSN: 2072-6694 Open Access Link

Schneider, G. and Winter, M. (2021) 'The amplitude system for a simultaneous short-wave Turing and long-wave Hopf instability'. Discrete and Continuous Dynamical Systems: Series S, 15 (9). pp. 2657 - 2672. ISSN: 1937-1632 Open Access Link

Li, JA., Li, Y., Li, G., Hu, X., Xia, X. and Jin, Z. (2021) 'EditSum: A Retrieve-and-Edit Framework for Source Code Summarization'.2021 36th IEEE/ACM International Conference on Automated Software Engineering (ASE). IEEE. pp. 155 - 166.

Taylor, S. and Anagnostou, A. (2021) 'Distributed Supply Chain Simulation: An Overview'.2021 INFORMS Annual Meeting.  [unpublished]

Anagnostou, A., Mintram, K. and Taylor, S. (2021) 'Modelling the Lifelong Impact of Covid-19 on Individual Health'.2021 INFORMS Annual Meeting.  [unpublished]

Tian, L., Wang, Z., Liu, W., Cheng, Y., Alsaadi, FE. and Liu, X. (2021) 'Empower parameterized generative adversarial networks using a novel particle swarm optimizer: algorithms and applications'. International Journal of Machine Learning and Cybernetics, 13 (4). pp. 1145 - 1155. ISSN: 1868-8071 Open Access Link

Saravi, S., Alizzi, Z., Tosi, S., Hall, M. and Karteris, E. (2021) 'Preclinical Studies on the Effect of Rucaparib in Ovarian Cancer: Impact of BRCA2 Status'. Cells, 10 (9). pp. 1 - 13. ISSN: 2073-4409 Open Access Link

Smith, M., Yadav, S., Fagunloye, OG., Pels, NA., Horton, DA., Alsultan, N., Borns, A., Cousin, C., Dixon, F., Mann, VH., Lee, C., Brindley, PJ., El-Sayed, NM., Bridger, JM. and Knight, M. et al. (2021) 'Piwi silencing mechanism involving the retrotransposon nimbus orchestrates resistance to infection with schistosoma mansoni in the snail vector, biomphalaria glabrata'. PLoS Neglected Tropical Diseases, 15 (9). pp. 1 - 28. ISSN: 1935-2727 Open Access Link

Tian, L., Wang, Z., Liu, W., Cheng, Y., Alsaadi, FE. and Liu, X. (2021) 'A New GAN-Based Approach to Data Augmentation and Image Segmentation for Crack Detection in Thermal Imaging Tests'. Cognitive Computation, 13 (5). pp. 1263 - 1273. ISSN: 1866-9956 Open Access Link

Counsell, S., Swift, S. and Tahir, A. (2021) 'Where the Bugs are: A Quasi-replication Study of the Effect of Inheritance Depth and Width in Java Systems'.14th International Conference on the Quality of Information and Communications Technology (QUATIC 2021). Algarve, Portugal (online). 25 - 11 September. Springer International Publishing. pp. 459 - 472. ISSN: 1865-0929 Open Access Link

Mustafee, N., Katsaliaki, K. and Taylor, SJE. (2021) 'Distributed Approaches to Supply Chain Simulation: A Review'. ACM Transactions on Modeling and Computer Simulation, 31 (4). pp. 1 - 31. ISSN: 1049-3301 Open Access Link

Tian, L., Wang, Z., Liu, W., Cheng, Y., Alsaadi, FE. and Liu, X. (2021) 'An improved generative adversarial network with modified loss function for crack detection in electromagnetic nondestructive testing'. Complex & Intelligent Systems, 2021 (1). pp. 1 - 10. ISSN: 2199-4536 Open Access Link

Mintram, K., Anagnostou, A. and Taylor, S. (2021) 'Modelling the Lifelong Impact of Covid-19 on Individual Health'.The OR Society's 63rd Annual Conference. Southampton (virtual). [unpublished]

Cheng, H., Wang, Z., Ma, L., Liu, X. and Wei, Z. (2021) 'Multi-task Pruning via Filter Index Sharing: A Many-Objective Optimization Approach'. Cognitive Computation, 13 (4). pp. 1070 - 1084. ISSN: 1866-9956 Open Access Link

Ghoshal, B., Swift, S. and Tucker, A. (2021) 'Bayesian Deep Active Learning for Medical Image Analysis'. Virtual (Porto, Portugal). 8 - 18 June. Springer International Publishing. pp. 36 - 42. ISSN: 0302-9743

Mehta, I., Riyahi, K., Torres Pereira, R., Meaburn, K., Figgitt, M., Kill, I., Eskiw, C. and Bridger, J. et al. (2021) 'Interphase Chromosomes in Replicative Senescence: chromosome positioning as a senescence biomarker and the lack of nuclear motor-driven chromosome repositioning in senescent cells.'. Frontiers in Cell and Developmental Biology, 9. pp. 1 - 18. ISSN: 2296-634X Open Access Link

Ghoshal, B., Ghoshal, B., Swift, S. and Tucker, A. (2021) 'Uncertainty Estimation in SARS-CoV-2 B-Cell Epitope Prediction for Vaccine Development'.Artificial Intelligence in Medicine 19th International Conference on Artificial Intelligence in Medicine (AIME 2021). Virtual (Porto, Portugal). 22 - 18 June. Springer International Publishing. pp. 361 - 366. ISSN: 0302-9743 Open Access Link

Liu, W., Wang, Z., Tian, L., Lauria, S. and Liu, X. (2021) 'Melt pool segmentation for additive manufacturing: A generative adversarial network approach'. Computers and Electrical Engineering, 92. pp. 1 - 11. ISSN: 0045-7906 Open Access Link

Zou, L., Wang, Z., Hu, J., Liu, Y. and Liu, X. (2021) 'Communication-protocol-based analysis and synthesis of networked systems: progress, prospects and challenges'. International Journal of Systems Science, 52 (14). pp. 3013 - 3034. ISSN: 0020-7721 Open Access Link

Ravi, T., Sai Aditya, VV., Rani, BMS. and Boppana, M. (Accepted) 'Segmentation of Blood Vessels and Optic disc in Retinal Images'. Journal of Telematics and Informatics, 3 (1). ISSN: 2303-3711

Anagnostou, A., Groen, D., Taylor, S., Mahmood Qureshi Hashmi, I., Abubakar, N., Mintram, K., Gioannini, C., Rossi, L., Ben Miled, S., Louati, D., Karalis, A., Plakia, M. and Vlachostergiou, A. et al. (2021) 'Simulation Modelling and AI for Pandemic Crisis Management: The STAMINA Predictive Modelling Toolset'. [Poster] Exhibited at. Operational Research Society 10th Simulation Workshop (SW21) 22 3 2021

Abubakar, N., Taylor, S. and Anagnostou, A. (2021) 'Cloud-Based Distributed Simulation Framework'. [Poster] Exhibited at. Operational Research Society 10th Simulation Workshop (SW21) 22 3 2021

Liu, W., Wang, Z., Zeng, N., Alsaadi, FE. and Liu, X. (2021) 'A PSO-based deep learning approach to classifying patients from emergency departments'. International Journal of Machine Learning and Cybernetics, 12 (7). pp. 1939 - 1948. ISSN: 1868-8071 Open Access Link

Godwin, LS., Bridger, JM. and Foster, HA. (2021) 'Fluorescence in situ Hybridization on DNA Halo Preparations to reveal whole Chromosomes, Telomeres and Gene Loci'. Journal of Vizualized Experiments, 169 (169). pp. 1 - 22. ISSN: 1940-087X Open Access Link

Gulino, GM., Bruno, F., Sturiale, V., Brancato, D., Ragusa, D., Tosi, S., Saccone, S. and Federico, C. et al. (2021) 'From FISH to Hi-C: the chromatin architecture of the chromosomal region 7q36.3, frequently rearranged in leukemic cells, is evolutionary conserved'. International Journal of Molecular Sciences, 22 (5). pp. 1 - 16. ISSN: 1661-6596 Open Access Link

Yue, W., Wang, Z., Zhang, J. and Liu, X. (2021) 'An Overview of Recommendation Techniques and Their Applications in Healthcare'. IEEE/CAA Journal of Automatica Sinica, 8 (4). pp. 701 - 717. ISSN: 2329-9266 Open Access Link

Bridger, JM. and Foster, HA. (2021) 'Senescence and the Genome', in Iourov, I., Vorsanova, S. and Yurov, Y. (eds.) Human Interphase Chromosomes: Biomedical Aspects. Cham, Switzerland : Springer International Publishing. pp. 87 - 106. ISBN 13: 978-3-030-62531-3. Open Access Link

Zou, L., Wang, Z., Geng, H. and Liu, X. (2021) 'Set-Membership Filtering Subject to Impulsive Measurement Outliers: A Recursive Algorithm'. IEEE/CAA Journal of Automatica Sinica, 8 (2). pp. 377 - 388. ISSN: 2329-9266 Open Access Link

Li, M., Wang, Z., Li, K., Liao, X., Hone, K. and Liu, X. (2021) 'Task Allocation on Layered Multi-Agent Systems: When Evolutionary Many-Objective Optimization Meets Deep Q-Learning'. IEEE Transactions on Evolutionary Computation, 25 (5). pp. 842 - 855. ISSN: 1089-778X Open Access Link

Robinson, S. and Taylor, SJE. (2021) 'Celebrating 20 years: The story of the simulation workshop'.SW21 The OR Society Simulation Workshop. Operational Research Society. pp. 1 - 9.

Taylor, SJE., Johansson, B., Jeon, S., Lee, LH., Lendermann, P. and Shao, G. (2021) 'Using Simulation and Digital Twins to Innovate: Are we Getting Smarter?'.2021 Winter Simulation Conference (WSC). IEEE. pp. 1 - 13. ISSN: 0891-7736

Taylor, SJE., Son, YJ., Branke, J., Rose, O. and Sanchez, SM. (2021) 'Using Simulation and Artificial Intelligence to Innovate: Are We Getting even Smarter?'.2021 Winter Simulation Conference (WSC). IEEE. pp. 1 - 9. ISSN: 0891-7736

Wei, B., Li, Y., Li, G., Xia, X. and Jin, Z. (2020) 'Retrieve and refine'.ASE '20: 35th IEEE/ACM International Conference on Automated Software Engineering. ACM.

Taylor, SJE., Anagnostou, A., Abubakar, N., Kiss, T., DesLauriers, J., Terstyanszky, G., Kacsuk, P., Kovacs, J., Kite, S., Pattison, G. and Petry, J. et al. (2020) 'Innovations in Simulation: Experiences with Cloud-based Simulation Experimentation'.2020 Winter Simulation Conference (WSC). Virtual Conference. 14 - 18 December. IEEE. pp. 3164 - 3175. ISSN: 0891-7736 Open Access Link

Nwogu, C., Taylor, SJE. and Anagnostou, A. (2020) 'Towards a Generic Architecture from Symbiotic Simulation System-based Digital Twin'. [Poster] Exhibited at. 2020 Winter Simulation Conference (WSC20) 14 12 2020

Counsell, S., Destefanis, G., Swift, S., Arzoky, M. and Taibi, D. (2020) 'On the Link between Refactoring Activity and Class Cohesion through the Prism of Two Cohesion-Based Metrics'.2020 IEEE 20th International Conference on Software Quality, Reliability and Security (QRS). Macau, China (virtual). 11 - 14 December. IEEE. pp. 91 - 98.Open Access Link

Counsell, S., Swift, S., Arzoky, M. and Destefanis, G. (2020) 'On Clones and Comments in Production and Test Classes: An Empirical Study'.25th International Conference on Product-Focused Software Process Improvement PROFES 2020. Turin, Italy. 21 - 27 November. Springer International Publishing. pp. 304 - 311. ISSN: 0302-9743

Vanuytsel, K., Villacorta-Martin, C., Lindstrom-Vautrin, J., Wang, Z., Garcia Beltran, W., Matte, T., Dowrey, TW., Li, VM., Dries, R., Campbell, JD., Belkina, AC., Balazs, A. and Murphy, GJ. et al. (2020) 'Transcriptional, Protein-Level and Functional Profiling of Human Fetal Liver (FL)-Derived Hematopoietic Stem Cells (HSCs) at Single Cell Resolution'. Blood, 136 (Supplement 1). pp. 33 - 33. ISSN: 0006-4971

Wang, C. and Li, Y. (2020) 'Blood Vessel Segmentation from Retinal Images'.2020 IEEE 20th International Conference on Bioinformatics and Bioengineering (BIBE). Cincinnati, OH, USA (Virtual). 26 - 28 October. IEEE. pp. 759 - 766. ISSN: 2159-5410

Taefehshokr, N., Miao, T., Symonds, ALJ., Wang, P. and Li, S. (2020) 'Egr2 regulation in T cells is mediated through IFNγ/STAT1 and IL-6/STAT3 signalling pathway'. Pathology Research and Practice, 216 (12). pp. 153259 - 153259. ISSN: 0344-0338

Wan, Z., Yang, R., Huang, M., Zeng, N. and Liu, X. (2020) 'A review on transfer learning in EEG signal analysis'. Neurocomputing, 421. pp. 1 - 14. ISSN: 0925-2312

Anagnostou, A. and Taylor, S. (2020) 'Can Open Science Change the World?'. IEEE Computer, 53 (10). pp. 13 - 22. ISSN: 0018-9162 Open Access Link

Aondoakaa, D., Cosmas, J. and Swift, S. (2020) 'Exploiting heterogeneity for cost efficient 5G base station deployment using metaheuristics'. IET Networks, 9 (5). pp. 270 - 275. ISSN: 2047-4954 Open Access Link

Counsell, S., Swift, S., Arzoky, M. and Destefanis, G. (2020) 'Is complexity of re-test a reason why some refactorings are buggy? an empirical perspective'.13th International Conference on the Quality of Information and Communications Technology (QUATIC 2020. Faro, Portugal. 31 - 11 September. Springer International Publishing. pp. 83 - 90. ISSN: 1865-0929

Yue, W., Wang, Z., Liu, W., Tian, B., Lauria, S. and Liu, X. (2020) 'An optimally weighted user- and item-based collaborative filtering approach to predicting baseline data for Friedreich's Ataxia patients'. Neurocomputing, 419 (2 January 2021). pp. 287 - 294. ISSN: 0925-2312 Open Access Link

Mahmood, I., Arabnejad, H., Suleimenova, D., Sassoon, I., Marshan, A., Serrano, A., Louvieris, P., Anagnostou, A., Taylor, S., Bell, D. and Groen, D. et al. (2020) 'FACS: A geospatial agent-based simulator for analyzing COVID-19 spread and public health measures on local regions'. Journal of Simulation, 16 (4). pp. 355 - 373. ISSN: 1747-7778 Open Access Link

Zhao, D., Wang, Z., Wei, G. and Liu, X. (2020) 'Nonfragile H∞State Estimation for Recurrent Neural Networks with Time-Varying Delays: On Proportional-Integral Observer Design'. IEEE Transactions on Neural Networks and Learning Systems, 32 (8). pp. 3553 - 3565. ISSN: 2162-237X Open Access Link

Liu, W., Wang, Z., Zeng, N., Yuan, Y., Alsaadi, FE. and Liu, X. (2020) 'A novel randomised particle swarm optimizer'. International Journal of Machine Learning and Cybernetics, 12 (2). pp. 529 - 540. ISSN: 1868-8071 Open Access Link

Cheng, H., Wang, Z., Wei, Z., Ma, L. and Liu, X. (2020) 'On Adaptive Learning Framework for Deep Weighted Sparse Autoencoder: A Multiobjective Evolutionary Algorithm'. IEEE Transactions on Cybernetics, 52 (5). pp. 3221 - 3231. ISSN: 2168-2267

Li, J., Guo, K., Viedma, EH., Lee, H., Liu, J., Zhong, N., Autran Monteiro Gomes, LF., Filip, FG., Fang, S-C., Özdemir, MS., Liu, X., Lu, G. and Shi, Y. et al. (2020) 'Culture versus Policy: More Global Collaboration to Effectively Combat COVID-19'. The Innovation, 1 (2). pp. 100023 - 100023. ISSN: 2666-6758 Open Access Link

Symonds, ALJ., Zheng, W., Miao, T., Wang, H., Wang, T., Kiome, R., Hou, X., Li, S. and Wang, P. et al. (2020) 'Egr2 and 3 control inflammation, but maintain homeostasis, of PD-1^high memory phenotype CD4 T cells'. Life Science Alliance, 3 (9). pp. 1 - 16. ISSN: 2575-1077 Open Access Link